By Heitor Silverio Lopes - Leonardo Magalhães Cruz (Eds)
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Extra resources for Computational Biology and Applied Bioinformatics
Journal of Biomedical Informatics 39(1):18-33. Ronquist, F. & Huelsenbeck, J. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19(12):1572-1574 Molecular Evolution & Phylogeny: What, When, Why & How? 27 Rzhetsky, A. (1995) Estimating substitution rates in ribosomal RNA genes. Genetics 141(2):771. Saitou, N. & Nei, M. (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4(4):406-25. ; Afzal, M. & Paiva, T. (2008) Detection of a new mumps virus genotype during parotitis epidemic of 2006–2007 in the State of São Paulo, Brazil.
Wunsch, C. (1970) A general method applicable to the search for similarities in the amino acid sequence of two proteins. Journal of Molecular Biology 48(3):443-453. ; Ropelewski, A. & Deerfield DW. (2002) Strategies for multiple sequence alignment. Biotechniques 32(3):572-591. ; Higgins, D. & Heringa, J. (2000) T-Coffee: A novel method for fast and accurate multiple sequence alignment. & Attwood, T. (1998). CINEMA--a novel colour INteractive editor for multiple alignments. ; Robins, G. & Zhang, T.
Tamura, K. (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief Bioinform, 9(4):299-306. ; Gibson, R. & others. (2011) The European Nucleotide Archive. Nucleic Acids Research 39(suppl 1):D28-D31. Lio, P. & Goldman, N. (1998) Models of molecular evolution and phylogeny. Genome Res 8(12):1233-44. ; Linder, C. & Warnow, T. (2010) Multiple sequence alignment: a major challenge to large-scale phylogenetics. PLoS Currents 2. ; Zhang, A. & Zhu, C. (2010) Performance of criteria for selecting evolutionary models in phylogenetics: a comprehensive study based on simulated datasets.
Computational Biology and Applied Bioinformatics by Heitor Silverio Lopes - Leonardo Magalhães Cruz (Eds)